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CAZyme Information: MGYG000002381_02673
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Stenotrophomonas bentonitica_A | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas bentonitica_A | |||||||||||
| CAZyme ID | MGYG000002381_02673 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 22078; End: 23358 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 41 | 401 | 5.1e-132 | 0.9943502824858758 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 0.0 | 38 | 400 | 1 | 359 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 6.34e-173 | 38 | 400 | 1 | 362 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 5.27e-128 | 41 | 400 | 1 | 358 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 5.23e-123 | 41 | 400 | 8 | 369 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 1.04e-49 | 43 | 376 | 231 | 566 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AOX63454.1 | 3.22e-306 | 1 | 426 | 1 | 426 |
| AHY59700.1 | 9.42e-266 | 1 | 418 | 1 | 418 |
| QIO87533.1 | 3.75e-262 | 1 | 426 | 1 | 428 |
| QHB70788.1 | 6.77e-262 | 1 | 418 | 1 | 421 |
| CCH11888.1 | 7.87e-248 | 1 | 418 | 1 | 414 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8S_A | 1.95e-117 | 34 | 417 | 2 | 382 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
| 5W8N_A | 2.77e-117 | 34 | 417 | 2 | 382 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q3BVL7 | 1.26e-210 | 37 | 417 | 43 | 423 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) OX=316273 GN=lpxB PE=3 SV=1 |
| Q8PML8 | 1.79e-210 | 1 | 422 | 1 | 428 | Lipid-A-disaccharide synthase OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=lpxB PE=3 SV=2 |
| Q4USP7 | 4.03e-209 | 37 | 416 | 42 | 421 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=lpxB PE=3 SV=2 |
| Q8PAW6 | 4.03e-209 | 37 | 416 | 42 | 421 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=lpxB PE=3 SV=2 |
| Q2P4B8 | 3.57e-206 | 1 | 417 | 1 | 423 | Lipid-A-disaccharide synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) OX=342109 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000046 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |