CAZyme Information: MGYG000002367_00928

Basic Information

• Species: Pediococcus pentosaceus
• Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus; Pediococcus pentosaceus
• CAZyme ID: MGYG000002367_00928
• CAZy Family: GH23
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1746		189438.89	10.4375

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002367	1751049	Isolate	China	Asia

• Gene Location: Start: 252093; End: 257333 Strand: +

Full Sequence      

MADGAINIDLKLKSDKFNREIKESDKLVSEFGKNAGEKLDKAFKDNTDKVINKAKLTKKE
IKALFDKDTKVKIVAEAEKAGIKDFEKVLKKLPKQQKIELFAEMKDKGTINFSKKLNNLN
NELRTDIGKLKSAYESTSHVQDSYINRLKAEGRSVEANKAEYQKLRSSIKNESELYQKEH
RLLTNLRSDRNEDASKIAKQTVKVNDLAASLARNTNKMKELSKTQSSFNRNPFTKMTKGL
LGLNKEGQKTHSIFKSMLAANLVSSAFTNALGLISNKLHDMWSNSMEYVKAQQTMNASWL
TLTGNAKEGQKMVNMTNDMAASFANSTDMVNDLNQKFYSISDSSKTTKQLTTDVLTLQDA
FGKTDDEVKNFSTQYSQMMANGKVSQQDMMSFVNVFPKIRTELLKTEQNITGNHKLSMSQ
LNDMISNGKVSSKVMQQVMDEMQKKYSSATANFGKTFDGMNRTINARVPVLLSAFTTPLL
KMRNPFLGAISQWVSDKKTEEEFGKLGTTASKGFSTITKAFSKALNFKDGFDSKQMFKRI
NGGIESLANFIAKHAKDIIGFFKGLWNGVKILGSIGTGFFKGLIGGIGAILKPLANLVSH
NKKVKTLSGALEELSKHKKGLEEIGKVIAGIFIARKLATFATGIAGLIGKLGELKTAFFG
VKTAAAEAGEAEELASATSGGGGGFLGNIFKRGKVAEEAGEMSRVARNGSKLGMLSKLKG
MSKFGKLAGGALGVGDVLMAGTDLLGMTKKTAGSHIGAFAGNLGGAAVGAAAGTAILPGI
GTLIGAGAGALGGEKIGRMLGKQIQKGLFGTKLKAPKISTKNAHDQLLKESKAYYSKKQK
QALDDLKTLKKNGAISNKEYEKEAEAIKKSGQKANSYDKKNKKDQTAIAKYYAQEKQKLT
EKWNNKIERDEKLYGKHSTQVQKDINDKKKALDKQHLKFATKVTGDEARLHTTLAGKIKR
ANAKMLKDDEKLTDKKKKLSRSEVKEIVKNADKEYDSVKSAADKKYKDVVRAADKQRDET
IKAAKREYSGNSQWAKDKRKEVIDAANKQHDRVVNRAEKQKNEAIDNAKAEKDRVSKHAD
DRYKNVSKSADNEYEAQKKANKKKKDDNSGFFHTVGTWWNKFTSGISSLLKVFGDSKFKA
PVMPVQYATGTGFFSGSRRPITKATPVMLNDGFDSPETGNREVGILPNGEMFSPQERNWT
GIVPAGTEILNATESKMLFGGGLKHFASGTGWLSGIGNFVGGVVKGAENVYKSIKKKFEL
AKNVISNPGKALDKLLGNPKKQKNSFFDKVSGDVFKPVKKQASDWWSTLWDKISGAMDDE
GGFGGIWAKSPGHGWEVTSGFGNRGAVSGGYSAHDGVDYSGAKTVHAMHGGTVSYVGGPP
SGWGGANGIGQNLVIKADDASVIYQELNGKYGSGADILVKKGDKVSTGQAIAKLGPSGTH
VHVGVSKGSPFSHSGTTTKGWYDIRDMKASKSDKKQQEKSKDTGLSGFIEKQFGKSFFSG
IAKMFAPFIEDAGGSGTGDPGGAGVHRWKSDVESALGKLGLSTSASMVNRVLRQINTESS
GNPKAMGGTDGLADGHAEGLMQVKPGTFRAYHLPGHNNIWNGFDNMLAGLNYAKHRYGSG
LSFLGNGHGYANGGWGRPGEISFFNEVPGEPEIAINPQRPSSEQHIAEVMIARAKNNPNG
FAAKALDVVTKAKRQVQSMQYTQSPNTSVAGSVNIYMEIDSKTVAKTTYPTTKLLLGKDI
VISNSR

Enzyme Prediction     

No EC number prediction in MGYG000002367_00928.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd13402	LT_TF-like	5.47e-41	1548	1660	1	115	lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
COG3953	SLT	1.20e-23	1541	1729	8	209	SLT domain protein [Mobilome: prophages, transposons].
pfam01551	Peptidase_M23	2.69e-11	1354	1448	3	90	Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.
cd12797	M23_peptidase	3.71e-11	1354	1445	1	85	M23 family metallopeptidase, also known as beta-lytic metallopeptidase, and similar proteins. This model describes the metallopeptidase M23 family, which includes beta-lytic metallopeptidase and lysostaphin. Members of this family are zinc endopeptidases that lyse bacterial cell wall peptidoglycans; they cleave either the N-acylmuramoyl-Ala bond between the cell wall peptidoglycan and the cross-linking peptide (e.g. beta-lytic endopeptidase) or a bond within the cross-linking peptide (e.g. stapholysin, and lysostaphin). Beta-lytic metallopeptidase, formerly known as beta-lytic protease, has a preference for cleavage of Gly-X bonds and favors hydrophobic or apolar residues on either side. It inhibits growth of sensitive organisms and may potentially serve as an antimicrobial agent. Lysostaphin, produced by Staphylococcus genus, cleaves pentaglycine cross-bridges of cell wall peptidoglycan, acting as autolysins to maintain cell wall metabolism or as toxins and weapons against competing strains. Staphylolysin (also known as LasA) is implicated in a range of processes related to Pseudomonas virulence, including stimulating shedding of the ectodomain of cell surface heparan sulphate proteoglycan syndecan-1, and elastin degradation in connective tissue. Its active site is less constricted and contains a five-coordinate zinc ion with trigonal bipyramidal geometry and two metal-bound water molecules, possibly contributing to its activity against a wider range of substrates than those used by related lytic enzymes, consistent with its multiple roles in Pseudomonas virulence. The family includes members that do not appear to have the conserved zinc-binding site and might be lipoproteins lacking proteolytic activity.
PTZ00121	PTZ00121	1.30e-09	812	1097	1328	1619	MAEBL; Provisional

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QDZ69404.1	0.0	1	1746	1	1755
AXR43511.1	0.0	127	1679	129	1485
QOP74179.1	9.50e-301	124	1679	126	1606
ARW19874.1	5.80e-289	1317	1746	1	430
QHM54834.1	4.86e-241	118	1682	121	1638

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P26812	1.08e-06	246	471	141	365	Tape measure protein (Fragment) OS=Lactococcus phage F4-1 OX=12387 PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000040	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002367_00928.