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CAZyme Information: MGYG000002273_02157

You are here: Home > Sequence: MGYG000002273_02157

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacteroides stercorirosoris
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides stercorirosoris
CAZyme ID MGYG000002273_02157
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
513 MGYG000002273_12|CGC1 57628.56 5.5625
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002273 6091524 Isolate China Asia
Gene Location Start: 28434;  End: 29975  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002273_02157.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 178 489 9.4e-44 0.9076923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 4.50e-26 149 415 82 396
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 2.87e-11 199 456 17 270
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03010 PLN03010 2.15e-07 148 456 45 336
polygalacturonase
PLN02188 PLN02188 1.84e-06 149 338 36 232
polygalacturonase/glycoside hydrolase family protein
pfam12708 Pectate_lyase_3 8.37e-05 149 190 1 44
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALJ60739.1 2.75e-303 1 513 1 513
QUT88277.1 2.75e-303 1 513 1 513
QUT44639.1 1.09e-234 31 506 28 503
QUT88201.1 5.52e-215 35 510 32 507
ALJ60816.1 6.37e-214 35 510 32 507

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 3.08e-09 152 339 47 276
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 1.18e-08 148 278 155 310
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q39766 1.63e-11 152 455 32 333
Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1
Q39786 1.63e-11 152 455 32 333
Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1
P15922 3.22e-10 148 443 150 528
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P26216 1.56e-09 151 443 42 335
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1
P35338 2.66e-08 151 443 42 335
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000000 0.000047 0.999994 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002273_02157.