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CAZyme Information: MGYG000002037_01311

You are here: Home > Sequence: MGYG000002037_01311

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; SFJ001;
CAZyme ID MGYG000002037_01311
CAZy Family GH23
CAZyme Description Elongation factor 4
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
920 100069.77 6.3896
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002037 2039797 MAG China Asia
Gene Location Start: 7193;  End: 9955  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002037_01311.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK05306 infB 0.0 226 917 60 742
translation initiation factor IF-2; Validated
TIGR00487 IF-2 0.0 341 920 5 584
translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors]
CHL00189 infB 0.0 227 915 52 735
translation initiation factor 2; Provisional
COG0532 InfB 0.0 420 917 1 502
Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis].
cd01887 IF2_eIF5B 1.30e-98 425 587 1 168
Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AGL64345.2 5.77e-203 349 917 280 854
CAE6204650.1 5.06e-14 429 628 752 968
AGL63702.2 2.81e-06 456 557 67 171

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JCJ_f 1.28e-192 342 913 310 880
Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12]
6O7K_f 6.88e-181 423 913 9 499
30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli]
1ZO1_I 2.08e-180 423 913 3 493
IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli]
5LMV_a 7.29e-155 347 917 3 568
Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8]
3J4J_A 1.36e-154 347 917 3 568
Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8RA37 7.78e-241 333 917 119 704
Translation initiation factor IF-2 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=infB PE=3 SV=1
Q9KA77 2.21e-238 331 917 140 726
Translation initiation factor IF-2 OS=Alkalihalobacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=infB PE=3 SV=1
A4XL70 5.55e-237 301 916 249 854
Translation initiation factor IF-2 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=infB PE=3 SV=1
Q895J8 6.09e-237 342 916 104 678
Translation initiation factor IF-2 OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=infB PE=3 SV=1
A7GRE3 9.88e-237 341 919 108 688
Translation initiation factor IF-2 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) OX=315749 GN=infB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000048 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002037_01311.