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CAZyme Information: MGYG000001770_01112

You are here: Home > Sequence: MGYG000001770_01112

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp900313215
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900313215
CAZyme ID MGYG000001770_01112
CAZy Family PL6
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
720 MGYG000001770_24|CGC1 78925.65 8.3374
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001770 3003526 MAG Denmark Europe
Gene Location Start: 23159;  End: 25321  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001770_01112.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL6 27 394 1.7e-112 0.9865591397849462
PL6 443 650 6.8e-40 0.6023054755043228

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd14251 PL-6 4.26e-147 28 390 1 364
Polysaccharide Lyase Family 6. Polysaccharide Lyase Family 6 is a family of beta-helical polysaccharide lyases. Members include alginate lyase (EC 4.2.2.3) and chondroitinase B (EC 4.2.2.19). Chondroitinase B is an enzyme that only cleaves the beta-(1,4)-linkage of dermatan sulfate (DS), leading to 4,5-unsaturated dermatan sulfate disaccharides as the product. DS is a highly sulfated, unbranched polysaccharide belonging to a family of glycosaminoglycans (GAGs) composed of alternating hexosamine (gluco- or galactosamine) and uronic acid (D-glucuronic or L-iduronic acid) moieties. DS contains alternating 1,4-beta-D-galactosamine (GalNac) and 1,3-alpha-L-iduronic acid units. The related chondroitin sulfate (CS) contains alternating GalNac and 1,3-beta-D-glucuronic acid units. Alginate lyases (known as either mannuronate (EC 4.2.2.3) or guluronate lyases (EC 4.2.2.11) catalyze the degradation of alginate, a copolymer of alpha-L-guluronate and its C5 epimer beta-D-mannuronate.
pfam14592 Chondroitinas_B 5.54e-104 28 395 1 383
Chondroitinase B. This family includes chondroitinases. These enzymes cleave the glycosaminoglycan dermatan sulfate.
pfam13229 Beta_helix 1.78e-05 571 702 8 114
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam05048 NosD 9.73e-05 221 337 75 189
Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.
pfam13229 Beta_helix 1.06e-04 547 681 36 144
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNT66846.1 0.0 1 720 1 720
QIU93442.1 1.74e-240 5 705 4 710
QUT26279.1 5.59e-237 5 705 4 710
QNL39961.1 1.67e-234 1 693 1 698
QEC55801.1 1.55e-178 9 704 3 706

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7DMK_A 1.50e-178 31 704 17 698
ChainA, BcAlyPL6 [Bacteroides clarus],7DMK_B Chain B, BcAlyPL6 [Bacteroides clarus],7DMK_C Chain C, BcAlyPL6 [Bacteroides clarus],7DMK_D Chain D, BcAlyPL6 [Bacteroides clarus]
5GKD_A 3.28e-119 36 674 13 678
Structureof PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_B Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_C Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_D Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis]
5GKQ_A 2.52e-118 36 674 13 678
Structureof PL6 family alginate lyase AlyGC mutant-R241A [Paraglaciecola chathamensis S18K6],5GKQ_B Structure of PL6 family alginate lyase AlyGC mutant-R241A [Paraglaciecola chathamensis S18K6]
7O77_A 1.65e-117 44 674 20 678
ChainA, Poly(Beta-D-mannuronate) lyase [Pseudoalteromonas atlantica T6c]
7O7T_A 1.65e-117 44 674 20 678
ChainA, Poly(Beta-D-mannuronate) lyase [Pseudoalteromonas atlantica T6c]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q06365 9.75e-65 44 392 3 345
Alginate lyase OS=Pseudomonas sp. (strain OS-ALG-9) OX=86038 GN=aly PE=3 SV=1
Q46079 1.12e-23 11 339 14 349
Chondroitinase-B OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) OX=485917 GN=cslB PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000403 0.998811 0.000245 0.000194 0.000169 0.000160

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001770_01112.