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CAZyme Information: MGYG000001643_00274

You are here: Home > Sequence: MGYG000001643_00274

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; CAG-485;
CAZyme ID MGYG000001643_00274
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
409 MGYG000001643_5|CGC1 45532.19 5.8079
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001643 4013444 MAG United States North America
Gene Location Start: 26326;  End: 27555  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001643_00274.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 64 404 4.7e-57 0.916923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.76e-38 36 397 83 450
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.33e-12 121 371 42 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02188 PLN02188 5.96e-11 38 351 39 325
polygalacturonase/glycoside hydrolase family protein
PLN03003 PLN03003 5.56e-09 132 371 112 322
Probable polygalacturonase At3g15720
PLN02218 PLN02218 6.84e-09 38 256 70 272
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCD40899.1 2.80e-199 2 408 17 425
QCP73439.1 4.01e-193 11 400 27 415
QCD39791.1 4.01e-193 11 400 27 415
BCS85374.1 3.01e-176 11 400 28 416
QUT59668.1 1.12e-161 1 409 12 417

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 3.80e-23 26 386 31 414
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 7.36e-19 40 371 32 381
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
4C2L_A 1.68e-09 46 254 25 216
Crystalstructure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 9.48e-15 38 260 65 283
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P35338 9.73e-14 33 332 38 315
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1
P26216 1.30e-13 33 332 38 315
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1
P35339 7.44e-13 33 332 38 315
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1
P15922 4.63e-11 8 149 126 270
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000058 0.000006 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001643_00274.