CAZyme Information: MGYG000001490_00883

Basic Information

• Species: Bifidobacterium catenulatum
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium catenulatum
• CAZyme ID: MGYG000001490_00883
• CAZy Family: GH23
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1350		143327.91	10.1685

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001490	2079525	Isolate	not provided	not provided

• Gene Location: Start: 1005333; End: 1009385 Strand: +

Full Sequence      

MVMAGTAAWIDVLPNLSAFGTKLNSGVTAAAASAGRNAGRKFADSMNTAAGTNVLAEQVK
NLEGAEKRAQKAVTTATAQIVKARDEQKSATLRVQAAETKLNETVAKYGAASSQAISAQA
RLNDARSKARQKDEAYKNAEEQIRAAQNGLKETQTQLAAAQQKASTATGGFRNALQKWKQ
AADLAKSSTSGLSEAQSRFSETSRRMTARFSAMAGAVGGFTSSVVGKAVSTFASLGSSMV
DASDSAQKFASTMSFAGVSDNTIKKLTASTQDYADKTVFNLSDIRNTTAQLASNGVKNYS
KLAEAAGNLTAVAGGGAEAYKSVAMVMTQTAGAGKLTTENWNQLSDAIPGASGKLQDAMK
KAGAYTGNFRDAMAGGEITAEEFNKAILQLGMTDVAKQAAESTTTFEGAMGNWEAAVQKL
GMTALDKVKPQLTGALNAMTDRIGQFTDWFSGAWDGLAAFLSTGKVNKAFAEAFKIDKSS
YTGIEDAYQRIKWGYAGLVNFVKTGEFTYEFNRAFENVDRDTLISFKQNLLDLRDAAKQV
VENLPGLSAFFDVPSKGDHSNLNKAIKALNVALEGLKPIIQLIADIEKMWNSLSAEQQGA
IFDTAIYLWLGSKGLKILKNVYGTGKDIATAFKTGGKALKTFGTVLKDLKVPKTVSSFID
KVGKTGSKLLGSAGGTLALGGSMLAGAANNLQKGTPKTLWKAMQGVQGKDTSDKAYEQYQ
KQYQQTQENSSFLGVKNSTWLHNLNPLNWPSMASNAISSVGGMQQSGVDQVQQAWSGCVD
WISAKWQGLTDWFSGLPATIGSFFSGLPSTVGGWFDSAGQWVESGWQGVCDWFGGIPNVI
GAWFSGIPSAIGGWFSSAGSLAQSVWNGIIAWFGGVPWRITGWFSGIPGTFSGIFQSAKN
GITGIFGSVGGWFNQNVKTPISNAVNAIGNTFSTTKDWIRSSWNQVKDAAKSPVSFIVNT
VYTNGIKKIWNSVAGAVGLNLKLPDVKFAEGGINPGYAPGVDSIPAMTSPGEAWMVPEWT
RAVGAANIYRWNRIARRQGVAAVREDMMMGGLRFAGGGIVGKVGSAVSGAKKWLEDLSET
AQSFVKNPGDWVASKILSPVKSQVAGIGGGQFGMMVGQLPVKAASALVDKAKSFASSLTD
KWKSKSESGQYHGAVGGGVEQWRSLVIRVLKELGQAESWADTVLRRMNQESGGNPNAINN
WDSNAKAGHPSQGLMQTIPGTFNAYAGPYRSLGITNPLANIYAGVNYALHRYGSLSALNR
AGGYAFGGIVGDRPTLYDRGGILPPGRHLVANETKQPELVLTREQVLKVFGGEVRDKGDR
TVNLNVNIPERSDPWADASILVRTARHQLR

Enzyme Prediction     

No EC number prediction in MGYG000001490_00883.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd13402	LT_TF-like	7.02e-44	1180	1303	1	113	lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
COG3953	SLT	7.65e-24	1173	1334	8	172	SLT domain protein [Mobilome: prophages, transposons].
pfam01464	SLT	3.85e-07	1189	1253	21	79	Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.
TIGR02168	SMC_prok_B	6.32e-07	56	212	212	376	chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
pfam12795	MscS_porin	7.77e-07	56	164	16	153	Mechanosensitive ion channel porin domain. The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BAR01815.1	0.0	3	1350	1	1348
BAQ31567.1	6.89e-218	3	1305	1	1059
QFG46751.1	6.35e-65	222	662	61	513
QLJ01544.1	2.14e-64	932	1315	947	1315
QLJ05716.1	2.75e-64	913	1324	913	1310

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P54334	2.31e-20	1153	1270	1088	1210	Phage-like element PBSX protein XkdO OS=Bacillus subtilis (strain 168) OX=224308 GN=xkdO PE=4 SV=2
P45931	5.62e-20	1153	1320	1340	1509	Uncharacterized protein YqbO OS=Bacillus subtilis (strain 168) OX=224308 GN=yqbO PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000039	0.000010	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001490_00883.