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CAZyme Information: MGYG000001457_01434
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas_B luteola | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_B; Pseudomonas_B luteola | |||||||||||
| CAZyme ID | MGYG000001457_01434 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | Pectate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1435261; End: 1436400 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 97 | 308 | 6.2e-88 | 0.9859154929577465 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 5.44e-64 | 9 | 377 | 3 | 344 | Pectate lyase [Carbohydrate transport and metabolism]. |
| smart00656 | Amb_all | 4.39e-52 | 100 | 308 | 7 | 186 | Amb_all domain. |
| pfam00544 | Pec_lyase_C | 7.23e-51 | 78 | 308 | 3 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QEU27653.1 | 3.63e-270 | 1 | 379 | 1 | 379 |
| AYN93236.1 | 4.24e-269 | 1 | 379 | 1 | 379 |
| QEU27654.1 | 3.83e-231 | 1 | 379 | 1 | 380 |
| AYN93237.1 | 7.73e-231 | 1 | 379 | 1 | 380 |
| QEU27652.1 | 1.51e-191 | 16 | 379 | 16 | 381 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1PCL_A | 7.76e-106 | 33 | 377 | 5 | 355 | ChainA, PECTATE LYASE E [Dickeya chrysanthemi] |
| 1OOC_A | 2.12e-96 | 32 | 377 | 9 | 361 | ChainA, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi] |
| 5AMV_A | 9.79e-96 | 38 | 377 | 13 | 398 | Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168] |
| 1JRG_A | 1.20e-95 | 32 | 377 | 9 | 361 | ChainA, Pectate lyase [Dickeya chrysanthemi],1JRG_B Chain B, Pectate lyase [Dickeya chrysanthemi],1JTA_A Chain A, pectate lyase A [Dickeya chrysanthemi] |
| 1BN8_A | 1.85e-95 | 38 | 377 | 34 | 419 | BacillusSubtilis Pectate Lyase [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q56806 | 8.48e-177 | 32 | 377 | 30 | 377 | Pectate lyase OS=Xanthomonas campestris pv. malvacearum OX=86040 PE=3 SV=1 |
| Q59671 | 7.55e-169 | 28 | 377 | 29 | 380 | Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1 |
| Q60140 | 2.89e-166 | 21 | 377 | 21 | 379 | Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1 |
| Q51915 | 1.92e-164 | 28 | 377 | 29 | 380 | Pectate lyase OS=Pseudomonas marginalis OX=298 GN=pel PE=1 SV=1 |
| P72242 | 8.71e-163 | 11 | 377 | 10 | 379 | Pectate lyase OS=Pseudomonas amygdali pv. lachrymans OX=53707 GN=pelP PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000314 | 0.998914 | 0.000195 | 0.000210 | 0.000176 | 0.000165 |