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CAZyme Information: MGYG000001457_01433

You are here: Home > Sequence: MGYG000001457_01433

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pseudomonas_B luteola
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_B; Pseudomonas_B luteola
CAZyme ID MGYG000001457_01433
CAZy Family PL1
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
380 MGYG000001457_1|CGC11 40231.28 9.7936
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001457 5659210 Isolate not provided not provided
Gene Location Start: 1433858;  End: 1435000  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 97 309 2.7e-87 0.9906103286384976

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.85e-67 18 378 15 344
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 2.18e-59 101 309 7 186
Amb_all domain.
pfam00544 Pec_lyase_C 2.46e-55 79 309 3 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QEU27654.1 8.27e-272 1 380 1 380
AYN93237.1 4.78e-271 1 380 1 380
QEU27653.1 1.34e-231 1 380 1 379
AYN93236.1 1.91e-231 1 380 1 379
QEU27652.1 4.25e-189 17 380 16 381

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1PCL_A 2.38e-102 34 378 5 355
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
1BN8_A 1.08e-94 10 378 2 419
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
5AMV_A 1.14e-94 39 378 13 398
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
2BSP_A 3.05e-94 10 378 2 419
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
1OOC_A 5.65e-94 32 378 9 361
ChainA, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q56806 1.12e-172 34 378 31 377
Pectate lyase OS=Xanthomonas campestris pv. malvacearum OX=86040 PE=3 SV=1
Q59671 1.33e-162 12 378 15 380
Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1
Q51915 1.33e-162 20 378 20 380
Pectate lyase OS=Pseudomonas marginalis OX=298 GN=pel PE=1 SV=1
Q60140 2.68e-162 20 378 20 379
Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1
P72242 1.14e-158 11 378 9 379
Pectate lyase OS=Pseudomonas amygdali pv. lachrymans OX=53707 GN=pelP PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000292 0.999018 0.000190 0.000185 0.000156 0.000140

TMHMM  Annotations      download full data without filtering help

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