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CAZyme Information: MGYG000001417_02640
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Noviherbaspirillum massiliense | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Noviherbaspirillum; Noviherbaspirillum massiliense | |||||||||||
| CAZyme ID | MGYG000001417_02640 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | Soluble lytic murein transglycosylase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2785455; End: 2787407 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH23 | 492 | 620 | 1.2e-26 | 0.7925925925925926 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13401 | Slt70-like | 3.32e-66 | 472 | 624 | 1 | 152 | 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda. |
| PRK11619 | PRK11619 | 2.12e-49 | 6 | 632 | 12 | 634 | lytic murein transglycosylase; Provisional |
| cd16896 | LT_Slt70-like | 3.01e-40 | 474 | 617 | 1 | 143 | uncharacterized lytic transglycosylase subfamily with similarity to Slt70. Uncharacterized lytic transglycosylase (LT) with a conserved sequence pattern suggesting similarity to the Slt70, a 70kda soluble lytic transglycosylase which also has an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
| COG0741 | MltE | 4.09e-34 | 342 | 633 | 3 | 295 | Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell wall/membrane/envelope biogenesis]. |
| cd00254 | LT-like | 2.30e-33 | 493 | 618 | 2 | 110 | lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QDZ29121.1 | 0.0 | 1 | 650 | 1 | 647 |
| ABR89018.1 | 1.04e-306 | 1 | 650 | 1 | 649 |
| CAL63058.1 | 1.17e-298 | 1 | 650 | 1 | 649 |
| AMP11789.1 | 6.20e-296 | 1 | 650 | 1 | 658 |
| AMP01890.1 | 6.20e-296 | 1 | 650 | 1 | 658 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6FPN_B | 1.30e-86 | 51 | 639 | 5 | 583 | Lytictransglycosylase in action [Neisseria meningitidis MC58] |
| 5O24_A | 1.43e-86 | 51 | 639 | 9 | 587 | Lytictransglycosylase in action [Neisseria meningitidis] |
| 5O29_A | 1.67e-86 | 51 | 639 | 15 | 593 | Lytictransglycosylase in action [Neisseria meningitidis] |
| 5O1J_A | 2.19e-86 | 54 | 639 | 2 | 577 | Lytictransglycosylase in action [Neisseria meningitidis MC58] |
| 5O2O_A | 2.71e-86 | 51 | 639 | 35 | 613 | Lytictransglycosylase in action [Neisseria meningitidis],6H5F_A LtgA disordered Helix [Neisseria meningitidis NM422] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P0AGC3 | 7.48e-40 | 40 | 629 | 37 | 633 | Soluble lytic murein transglycosylase OS=Escherichia coli (strain K12) OX=83333 GN=slt PE=1 SV=1 |
| P0AGC4 | 7.48e-40 | 40 | 629 | 37 | 633 | Soluble lytic murein transglycosylase OS=Escherichia coli O157:H7 OX=83334 GN=slt PE=3 SV=1 |
| P39434 | 2.80e-38 | 40 | 634 | 37 | 637 | Soluble lytic murein transglycosylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=slt PE=3 SV=2 |
| P44888 | 4.27e-21 | 317 | 624 | 273 | 575 | Putative soluble lytic murein transglycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=slt PE=3 SV=1 |
| O31608 | 3.70e-13 | 481 | 622 | 64 | 181 | Putative murein lytic transglycosylase YjbJ OS=Bacillus subtilis (strain 168) OX=224308 GN=yjbJ PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000266 | 0.998996 | 0.000230 | 0.000169 | 0.000160 | 0.000138 |