CAZyme Information: MGYG000001402_01455

Basic Information

• Species: Coprobacillus cateniformis
• Lineage: Bacteria; Firmicutes; Bacilli; Erysipelotrichales; Erysipelatoclostridiaceae; Coprobacillus; Coprobacillus cateniformis
• CAZyme ID: MGYG000001402_01455
• CAZy Family: GH136
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1514	MGYG000001402_1|CGC19	169727.84	5.1245

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001402	3861289	Isolate	not provided	not provided

• Gene Location: Start: 1448837; End: 1453381 Strand: -

Full Sequence      

MKLLSKIFIIIVMIFSLISPRIVFASEEKTYGKVYYLDSHISKNDGNGLSEENAFNSLED
INNLMLQPGDKVLIKAGSQFTGTLWPKGSGCAGYPIVIDMYGEGNKPIIDANGSYFMPQV
KNWKGAFTGQNGDQIGAAVYLYNQEYIEINNLDVKNTGDNVNRDRSGIRIEGYDYGQINH
IYIRNCDIHDVRGYNGQDDIYPVVPTNPDGSPLDGYVGGDQSNPNTSNTFWGARTTHRTG
GINLVTYTARETEAPNDFNVAVQELDTTKKVTTFNDVLIENNKIENCQANGITTTNVKGT
LDDVDFRHTNVIIRNNYIHNVTRAGIIPLYTSGVIVEHNKVDTFQSTLEGYGCGIWCDRA
NGMIFQYNEVCNGQNGKDGMAFNLDDMTRDGVIQYNYTHDNYGGGYMLHVRQKSYNRNNT
IRYNLSVNDSGAFLDYNAQIVAVGETDVTKLESAKVYNNTFISNKDCHAVFEGDEVNYNN
NIWYFTNPTVAGRNQCFQPGKNSTFDNNAYIGCIAPQDDNQYTDDPQFVGGNSLFNLSQK
NAFSKIALKTTSPYINKSINVSGNGQQDILGQPLTSYNLGAIAGPGHNVKEIPQAQTVKA
DDNNVKRYFSDGTLQTVVIQESVLEADTKWVNTTFNDEPVIYTKKLNNYLEIPFTGTGGT
MKFKRGAGAGNVRVDVFEKGNLSTPVKTVNYNTYNASADVVTINDLQGLSSDNKDYIVKV
YNNENGKASNFMSLTSEVASGSDMQPGCQNDKVVGIVIEKPTLLTIPFGKSDASIAMNAH
TYMDTCYPQDVTIPVQYSINNGGQVKDHILTVTQPGQYKVTASATYNGNTVTATTTLIVE
EGHEPQVNEEPLHTKTLENLIHNCQSLNLNDFILDKQDVFKKQLNEAIELLKKNNLTQNQ
IDKMVDSLSQAKKQLIQIRFDAEDSAINRTGNWVEINEETLDKGTALKSGATDEKLSLMI
NGNEVSVYGRKAVGTGTVRFVITDLKDNREEQIISEDIDCYSETKKDKELLFHWKQEDNG
NYRLDIINTGQKNSIATNRDTNAIIDYIHVERANIETLEKTALMELINEYQKINFNQYQD
NQYKSDFITQLVHAKNLLISATTQSQLDDMVITLKTAKEAMLLKESTTVPSDHVNIKQEG
KFTLENNALVTNEKGAKLSFAFYGDGIELSVGQTAQTGLIKVTLYTIKNQKEEVLKTETI
DTRLTNKRSMTNPHILFAYYGVNGEYRIECENLDITQMIINGFQIIGEYKAVVNKADLEK
KISKIEKENISSQQYTKSSYEAFIKALNKAKDTVASSDNQQVINDTLTELTTAYNQLVRV
YIIRFEFFNKQIKEFKISAGSSFKEEIDEKWPNDSRTGYQFDGWKIKGSHDLFESSSPIT
QDIVLVPSLSAIQYAINYYDGSVVTTERFTVEDQIHLKTPTKKGYKFIGWYNNQKFEGQA
ITQISQRIGNIDLYAKWQKLDNIENKLPEKSQNDSVETADTFNFLGYALLFVITGLGSLY
LRKRYLKSMKSSKN

Enzyme Prediction     

No EC number prediction in MGYG000001402_01455.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH136	32	581	1.6e-98	0.9918533604887984

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	7.46e-07	275	405	32	141	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
NF033188	internalin_H	2.07e-05	1292	1462	314	485	InlH/InlC2 family class 1 internalin. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin H (InlH), or internalin C2, two class 1 (LPXTG-type) internalins that are closely related, one apparently derived from the other through a recombination event.
pfam09479	Flg_new	7.37e-05	1417	1456	25	65	Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria.
TIGR02543	List_Bact_rpt	3.63e-04	1420	1459	1	41	Listeria/Bacterioides repeat. This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]
NF033189	internalin_A	7.92e-04	1355	1459	595	704	class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AYE35145.1	1.77e-299	32	1322	35	1209
AZG68471.1	4.64e-150	16	487	103	559
QGQ95108.1	1.35e-58	24	636	28	567
QNK55088.1	3.06e-57	32	592	57	548
QNK55089.1	1.62e-56	32	586	253	739

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7V6M_A	7.83e-34	27	520	3	492	ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
6KQT_A	2.05e-22	32	434	244	622	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
6KQS_A	1.73e-20	32	434	244	622	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000279	0.999036	0.000190	0.000160	0.000156	0.000146

TMHMM  Annotations     

start	end
7	24
1484	1501