Species | Yokenella regensburgei | |||||||||||
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Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yokenella; Yokenella regensburgei | |||||||||||
CAZyme ID | MGYG000001394_01169 | |||||||||||
CAZy Family | GT9 | |||||||||||
CAZyme Description | Lipopolysaccharide heptosyltransferase 1 | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 266937; End: 267899 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GT9 | 76 | 300 | 4e-42 | 0.9022222222222223 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
PRK10964 | PRK10964 | 0.0 | 1 | 320 | 1 | 320 | lipopolysaccharide heptosyltransferase RfaC. |
TIGR02193 | heptsyl_trn_I | 2.99e-161 | 2 | 316 | 1 | 315 | lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
COG0859 | RfaF | 8.43e-92 | 1 | 316 | 2 | 326 | ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis]. |
pfam01075 | Glyco_transf_9 | 1.05e-88 | 75 | 313 | 1 | 243 | Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core. |
cd03789 | GT9_LPS_heptosyltransferase | 9.18e-55 | 2 | 314 | 1 | 273 | lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QIU90958.1 | 1.10e-232 | 1 | 320 | 1 | 320 |
AAX20099.1 | 1.09e-191 | 1 | 316 | 1 | 316 |
AZQ27546.1 | 1.09e-191 | 1 | 316 | 1 | 316 |
CDO11915.1 | 1.09e-191 | 1 | 316 | 1 | 316 |
AIK82062.1 | 1.72e-191 | 1 | 312 | 1 | 313 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
2GT1_A | 5.55e-183 | 1 | 312 | 1 | 312 | E.coli heptosyltransferase WaaC. [Escherichia coli UTI89],2GT1_B E. coli heptosyltransferase WaaC. [Escherichia coli UTI89] |
6DFE_A | 5.55e-183 | 1 | 312 | 1 | 312 | Thestructure of a ternary complex of E. coli WaaC [Escherichia coli],6DFE_B The structure of a ternary complex of E. coli WaaC [Escherichia coli] |
2H1F_A | 7.42e-183 | 1 | 312 | 1 | 312 | E.coli heptosyltransferase WaaC with ADP [Escherichia coli O6],2H1F_B E. coli heptosyltransferase WaaC with ADP [Escherichia coli O6],2H1H_A E. coli heptosyltransferase WaaC with ADP-2-deoxy-2-fluoro heptose [Escherichia coli RS218],2H1H_B E. coli heptosyltransferase WaaC with ADP-2-deoxy-2-fluoro heptose [Escherichia coli RS218] |
1PSW_A | 4.03e-12 | 192 | 302 | 195 | 310 | Structureof E. coli ADP-heptose lps heptosyltransferase II [Escherichia coli] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
P24173 | 3.35e-182 | 1 | 317 | 1 | 317 | Lipopolysaccharide heptosyltransferase 1 OS=Escherichia coli (strain K12) OX=83333 GN=rfaC PE=1 SV=1 |
P26469 | 4.02e-178 | 1 | 316 | 1 | 316 | Lipopolysaccharide heptosyltransferase 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rfaC PE=3 SV=2 |
P37421 | 2.20e-11 | 192 | 302 | 195 | 310 | ADP-heptose--LPS heptosyltransferase 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rfaF PE=3 SV=1 |
P37692 | 2.20e-11 | 192 | 302 | 195 | 310 | ADP-heptose--LPS heptosyltransferase 2 OS=Escherichia coli (strain K12) OX=83333 GN=rfaF PE=1 SV=1 |
P45042 | 1.06e-08 | 192 | 304 | 195 | 312 | ADP-heptose--LPS heptosyltransferase 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rfaF PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000061 | 0.000011 | 0.000001 | 0.000000 | 0.000000 | 0.000000 |
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