Species | Paenibacillus lautus_A | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus lautus_A | |||||||||||
CAZyme ID | MGYG000001371_00473 | |||||||||||
CAZy Family | PL22 | |||||||||||
CAZyme Description | Oligogalacturonate lyase | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 27418; End: 28563 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
PL22 | 29 | 149 | 4.1e-29 | 0.4528301886792453 |
PL22 | 182 | 366 | 2.8e-17 | 0.9238578680203046 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
pfam14583 | Pectate_lyase22 | 3.84e-36 | 1 | 371 | 1 | 384 | Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers. |
COG0823 | TolB | 3.68e-05 | 43 | 157 | 245 | 361 | Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport]. |
pfam07676 | PD40 | 7.44e-05 | 343 | 365 | 14 | 36 | WD40-like Beta Propeller Repeat. This family appears to be related to the pfam00400 repeat This This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. |
TIGR02800 | propeller_TolB | 1.84e-04 | 343 | 369 | 283 | 309 | tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] |
COG0823 | TolB | 2.65e-04 | 18 | 138 | 269 | 385 | Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport]. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
ACX62420.1 | 1.59e-290 | 1 | 381 | 1 | 381 |
AYB47100.1 | 2.71e-282 | 1 | 381 | 1 | 381 |
ANY73535.1 | 3.20e-265 | 1 | 381 | 1 | 381 |
QNK59416.1 | 3.73e-226 | 3 | 377 | 9 | 381 |
QGH32873.1 | 2.05e-166 | 1 | 377 | 1 | 376 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
3PE7_A | 1.02e-31 | 1 | 371 | 1 | 384 | Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081] |
3C5M_A | 8.05e-31 | 2 | 376 | 2 | 389 | Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q59418 | 1.66e-35 | 1 | 371 | 1 | 384 | Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2 |
P21258 | 2.24e-33 | 1 | 371 | 1 | 384 | Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000084 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
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