logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001356_00554

You are here: Home > Sequence: MGYG000001356_00554

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lawsonibacter sp000177015
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; Lawsonibacter; Lawsonibacter sp000177015
CAZyme ID MGYG000001356_00554
CAZy Family GH136
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
841 MGYG000001356_1|CGC4 92091.95 4.3552
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001356 3197155 Isolate not provided not provided
Gene Location Start: 572035;  End: 574560  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.140

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH136 53 606 4.7e-149 0.9959266802443992
CBM32 706 834 2.7e-26 0.9354838709677419

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 8.50e-21 705 833 1 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057 FA58C 1.56e-15 699 814 7 126
Substituted updates: Jan 31, 2002
smart00231 FA58C 6.47e-07 707 814 15 121
Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
pfam17132 Glyco_hydro_106 3.50e-05 737 832 204 300
alpha-L-rhamnosidase.
pfam13229 Beta_helix 0.002 304 459 9 157
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCT93619.1 5.53e-155 53 607 34 580
ARV05068.1 1.04e-151 53 607 34 579
ADO52688.1 6.61e-142 24 723 10 731
BBA56588.1 1.55e-141 24 723 10 732
ADP35567.1 8.15e-141 24 728 44 769

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7V6M_A 6.25e-163 52 607 7 577
ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
6KQT_A 5.87e-136 47 486 238 665
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
7V6I_A 6.03e-136 51 612 11 614
ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
5GQC_A 4.71e-134 45 607 9 597
Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]
6KQS_A 4.15e-132 47 486 238 665
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
I1S2N3 3.34e-15 701 834 52 187
Galactose oxidase OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=GAOA PE=3 SV=1
P0CS93 4.40e-15 701 834 52 187
Galactose oxidase OS=Gibberella zeae OX=5518 GN=GAOA PE=1 SV=1
P0DTR4 4.75e-12 613 833 438 641
A type blood N-acetyl-alpha-D-galactosamine deacetylase OS=Flavonifractor plautii OX=292800 PE=1 SV=1
P29767 4.86e-11 706 833 58 181
Sialidase OS=Clostridium septicum OX=1504 PE=3 SV=1
Q2MGH6 6.54e-10 711 837 1502 1626
Endo-alpha-N-acetylgalactosaminidase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=SP_0368 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.011406 0.987482 0.000334 0.000388 0.000199 0.000176

TMHMM  Annotations      download full data without filtering help

start end
21 43