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CAZyme Information: MGYG000001322_00562

You are here: Home > Sequence: MGYG000001322_00562

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Gemmiger variabilis
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Gemmiger; Gemmiger variabilis
CAZyme ID MGYG000001322_00562
CAZy Family CBM61
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
617 MGYG000001322_10|CGC2 66272.48 4.0769
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001322 3237471 Isolate not provided not provided
Gene Location Start: 165763;  End: 167616  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.89

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH53 355 616 9.7e-90 0.7309941520467836
CBM61 63 203 6e-19 0.9858156028368794

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3867 GanB 1.11e-91 338 617 23 289
Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism].
pfam07745 Glyco_hydro_53 9.02e-91 355 617 1 243
Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
COG2730 BglC 7.52e-05 390 553 76 231
Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism].
pfam00150 Cellulase 0.004 375 458 2 95
Cellulase (glycosyl hydrolase family 5).

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
VCV24089.1 2.56e-115 63 617 58 552
CBL10224.1 1.60e-113 63 617 58 553
ADL34775.1 3.42e-106 73 616 76 513
QCB95161.1 5.41e-100 333 617 12 279
ADZ82428.1 6.68e-99 58 616 28 620

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1R8L_A 2.27e-89 344 616 14 269
Thestructure of endo-beta-1,4-galactanase from Bacillus licheniformis [Bacillus licheniformis],1R8L_B The structure of endo-beta-1,4-galactanase from Bacillus licheniformis [Bacillus licheniformis],1UR0_A The structure of endo-beta-1,4-galactanase from Bacillus licheniformis in complex with two oligosaccharide products. [Bacillus licheniformis],1UR0_B The structure of endo-beta-1,4-galactanase from Bacillus licheniformis in complex with two oligosaccharide products. [Bacillus licheniformis],1UR4_A The structure of endo-beta-1,4-galactanase from Bacillus licheniformis in complex with two oligosaccharide products. [Bacillus licheniformis],1UR4_B The structure of endo-beta-1,4-galactanase from Bacillus licheniformis in complex with two oligosaccharide products. [Bacillus licheniformis],2CCR_A Structure of Beta-1,4-Galactanase [Bacillus licheniformis],2CCR_B Structure of Beta-1,4-Galactanase [Bacillus licheniformis],2J74_A Structure of Beta-1,4-Galactanase [Bacillus licheniformis],2J74_B Structure of Beta-1,4-Galactanase [Bacillus licheniformis]
2GFT_A 1.76e-88 344 616 14 269
ChainA, Glycosyl Hydrolase Family 53 [Bacillus licheniformis],2GFT_B Chain B, Glycosyl Hydrolase Family 53 [Bacillus licheniformis]
7OSK_A 7.58e-50 347 617 43 299
ChainA, Arabinogalactan endo-1,4-beta-galactosidase [Ignisphaera aggregans DSM 17230],7OSK_B Chain B, Arabinogalactan endo-1,4-beta-galactosidase [Ignisphaera aggregans DSM 17230]
4BF7_A 6.78e-29 356 613 22 266
Emericillanidulans endo-beta-1,4-galactanase [Aspergillus nidulans]
6GPA_A 1.80e-27 354 610 7 255
Beta-1,4-galactanasefrom Bacteroides thetaiotaomicron with galactose [Bacteroides thetaiotaomicron VPI-5482],6GPA_B Beta-1,4-galactanase from Bacteroides thetaiotaomicron with galactose [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q65CX5 2.63e-88 344 616 39 294
Endo-beta-1,4-galactanase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=ganB PE=1 SV=1
O07013 7.64e-85 341 616 40 298
Endo-beta-1,4-galactanase OS=Bacillus subtilis (strain 168) OX=224308 GN=ganB PE=1 SV=1
P48843 8.16e-34 354 617 6 256
Uncharacterized protein in bgaB 5'region (Fragment) OS=Niallia circulans OX=1397 PE=3 SV=1
Q5B153 3.59e-28 356 613 22 266
Arabinogalactan endo-beta-1,4-galactanase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=galA PE=1 SV=2
Q0CTQ7 4.78e-28 356 613 19 264
Probable arabinogalactan endo-beta-1,4-galactanase A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=galA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.499219 0.411047 0.082669 0.005354 0.000879 0.000829

TMHMM  Annotations      download full data without filtering help

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38 57