logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001129_00863

You are here: Home > Sequence: MGYG000001129_00863

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_C sp000437255
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C sp000437255
CAZyme ID MGYG000001129_00863
CAZy Family CBM14
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
493 MGYG000001129_121|CGC1 54730.87 4.3135
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001129 1878365 MAG China Asia
Gene Location Start: 1279;  End: 2760  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001129_00863.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd14256 Dockerin_I 4.43e-10 436 487 2 53
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.
pfam00404 Dockerin_1 7.04e-06 436 487 1 52
Dockerin type I repeat. The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADU21954.1 1.16e-180 1 427 1 398
ADU22444.1 2.86e-110 18 427 27 402
CBL16774.1 6.63e-103 41 314 264 536
CDM67270.1 2.06e-77 7 319 14 310
QGI94971.1 5.74e-28 43 312 61 300

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.005778 0.909815 0.082912 0.000828 0.000336 0.000280

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001129_00863.