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CAZyme Information: MGYG000001063_01017
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Robinsoniella sp900540475 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900540475 | |||||||||||
| CAZyme ID | MGYG000001063_01017 | |||||||||||
| CAZy Family | CBM67 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 56729; End: 62962 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH78 | 491 | 952 | 1.5e-86 | 0.9563492063492064 |
| CBM67 | 40 | 225 | 1.1e-39 | 0.9886363636363636 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam17389 | Bac_rhamnosid6H | 9.40e-36 | 575 | 893 | 3 | 337 | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. |
| COG5492 | YjdB | 3.27e-24 | 1786 | 1991 | 127 | 329 | Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only]. |
| COG5492 | YjdB | 1.21e-21 | 1906 | 2069 | 170 | 327 | Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only]. |
| pfam08531 | Bac_rhamnosid_N | 2.16e-13 | 65 | 219 | 1 | 154 | Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition. |
| pfam00754 | F5_F8_type_C | 1.26e-09 | 1214 | 1333 | 9 | 113 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AYC36171.1 | 4.35e-189 | 38 | 1357 | 40 | 1119 |
| AXE90460.1 | 5.82e-187 | 38 | 1357 | 40 | 1119 |
| QJT00118.1 | 2.14e-186 | 29 | 1357 | 31 | 1119 |
| QYX75380.1 | 1.48e-184 | 38 | 1357 | 40 | 1119 |
| QTU58279.1 | 3.93e-184 | 38 | 1357 | 40 | 1119 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3CIH_A | 3.08e-20 | 522 | 934 | 269 | 674 | Crystalstructure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482] |
| 3W5M_A | 2.56e-16 | 40 | 961 | 138 | 995 | CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893] |
| 6I60_A | 1.41e-12 | 57 | 244 | 179 | 352 | Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q82PP4 | 1.39e-15 | 40 | 961 | 138 | 995 | Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1 |
| P33747 | 2.01e-14 | 1836 | 2005 | 38 | 218 | Uncharacterized protein CA_P0160 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=CA_P0160 PE=3 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000275 | 0.999064 | 0.000186 | 0.000164 | 0.000148 | 0.000133 |
