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CAZyme Information: MGYG000000956_02046

You are here: Home > Sequence: MGYG000000956_02046

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Barnesiella sp900538705
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella; Barnesiella sp900538705
CAZyme ID MGYG000000956_02046
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1190 MGYG000000956_10|CGC1 128620.47 4.4182
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000956 2507716 MAG Denmark Europe
Gene Location Start: 6083;  End: 9655  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000956_02046.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 195 385 2.2e-43 0.9356435643564357

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 3.71e-45 171 427 62 323
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 4.30e-28 222 385 19 190
Amb_all domain.
pfam00544 Pec_lyase_C 1.11e-19 185 381 1 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
NF033188 internalin_H 5.76e-06 822 996 299 482
InlH/InlC2 family class 1 internalin. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin H (InlH), or internalin C2, two class 1 (LPXTG-type) internalins that are closely related, one apparently derived from the other through a recombination event.
NF033189 internalin_A 9.53e-06 874 1046 563 743
class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT73893.1 2.77e-178 21 542 21 541
QCD40816.1 2.83e-176 23 542 69 587
QCP73706.1 2.83e-176 23 542 69 587
BCJ94010.1 2.47e-165 21 542 41 564
AIQ71967.1 3.52e-161 30 542 43 557

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 1.41e-21 185 434 47 300
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1PCL_A 2.09e-17 180 452 42 328
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
1VBL_A 5.17e-16 222 381 135 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1AIR_A 2.21e-15 185 394 51 270
ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2EWE_A 5.29e-15 185 394 51 270
ChainA, Pectate lyase C [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8GCB2 5.00e-22 162 390 61 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
Q65DC2 5.00e-22 162 390 61 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
B1B6T1 5.00e-22 162 390 61 281
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
Q60140 1.82e-19 166 381 60 310
Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1
Q51915 1.42e-18 166 381 61 311
Pectate lyase OS=Pseudomonas marginalis OX=298 GN=pel PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001427 0.865008 0.132598 0.000387 0.000284 0.000256

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000956_02046.