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CAZyme Information: MGYG000000638_00650

You are here: Home > Sequence: MGYG000000638_00650

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnospira sp900547255
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; Lachnospira sp900547255
CAZyme ID MGYG000000638_00650
CAZy Family PL9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1809 MGYG000000638_9|CGC1 191060.67 4.586
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000638 2352186 MAG Madagascar Africa
Gene Location Start: 24408;  End: 29837  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000638_00650.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 1174 1556 1.9e-126 0.9813333333333333

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00041 fn3 1.24e-05 707 777 3 78
Fibronectin type III domain.
cd00063 FN3 1.83e-05 707 788 4 93
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
smart00060 FN3 2.20e-05 707 777 4 79
Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
pfam13229 Beta_helix 3.68e-04 1323 1469 9 128
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABX44216.1 1.20e-316 605 1582 223 1205
BCJ94249.1 5.57e-308 597 1582 216 1217
ACR71158.1 2.90e-303 1 1563 1 1644
ADL35206.1 3.42e-244 606 1509 1468 2390
AZV35805.1 1.00e-177 781 1570 76 881

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 5.14e-39 1179 1554 18 370
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 1.79e-13 1148 1545 9 405
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 4.80e-57 789 1461 26 646
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A6 7.79e-39 1179 1554 43 395
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 4.74e-38 1179 1554 43 395
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000296 0.999041 0.000164 0.000172 0.000158 0.000148

TMHMM  Annotations      download full data without filtering help

start end
7 29
1780 1797