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CAZyme Information: MGYG000000287_02339

You are here: Home > Sequence: MGYG000000287_02339

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Robinsoniella sp900539655
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900539655
CAZyme ID MGYG000000287_02339
CAZy Family CBM32
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1474 MGYG000000287_30|CGC1 163200.02 4.7764
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000287 7249439 MAG Sweden Europe
Gene Location Start: 21190;  End: 25614  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000287_02339.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH95 468 1088 2.3e-49 0.8227146814404432
CBM32 322 451 1.4e-18 0.8467741935483871
CBM32 158 277 7.8e-18 0.8306451612903226

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 3.77e-13 157 286 4 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam00754 F5_F8_type_C 3.95e-13 311 448 1 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057 FA58C 1.24e-07 313 433 14 128
Substituted updates: Jan 31, 2002
cd00063 FN3 7.41e-06 1286 1379 1 93
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
pfam17132 Glyco_hydro_106 1.34e-04 186 292 200 314
alpha-L-rhamnosidase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QHW32096.1 1.86e-218 48 1133 44 1081
QXE33659.1 1.19e-179 46 1133 67 952
AWS40658.1 1.20e-177 47 1133 40 926
BCB76148.1 1.96e-152 61 1133 10 879
QKW17790.1 2.00e-96 464 1110 135 758

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
E8MGH9 5.43e-09 1138 1308 1667 1838
Beta-L-arabinobiosidase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=hypBA2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000274 0.998992 0.000229 0.000210 0.000153 0.000135

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000287_02339.