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CAZyme Information: MGYG000000042_00669

You are here: Home > Sequence: MGYG000000042_00669

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola sp900066445
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sp900066445
CAZyme ID MGYG000000042_00669
CAZy Family GH5
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1094 MGYG000000042_2|CGC2 124304.35 6.7283
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000042 3613218 Isolate United Kingdom Europe
Gene Location Start: 46454;  End: 49738  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000042_00669.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH5 508 789 5.7e-112 0.9884169884169884

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR04416 group_II_RT_mat 4.27e-167 53 398 1 354
group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other]
cd01651 RT_G2_intron 3.05e-87 106 317 1 226
RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).
COG3344 YkfC 4.18e-48 30 317 32 325
Retron-type reverse transcriptase [Mobilome: prophages, transposons].
pfam00078 RVT_1 4.04e-37 110 317 1 189
Reverse transcriptase (RNA-dependent DNA polymerase). A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses.
cd01650 RT_nLTR_like 4.57e-19 128 317 30 220
RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALJ61520.1 0.0 439 1092 1 653
QUT92910.1 0.0 439 1092 1 651
QRM99007.1 0.0 440 1092 3 651
QUT32422.1 0.0 440 1092 3 651
QDO69414.1 0.0 447 1092 11 654

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6AR1_A 2.69e-103 46 425 3 381
Structureof a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Nat)) [Geobacillus stearothermophilus],6AR1_D Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Nat)) [Geobacillus stearothermophilus],7K9Y_A Chain A, Trt [Geobacillus stearothermophilus],7K9Y_D Chain D, Trt [Geobacillus stearothermophilus]
6AR3_A 2.73e-102 46 425 3 381
Structureof a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Se-Met)) [Geobacillus stearothermophilus],6AR3_D Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Se-Met)) [Geobacillus stearothermophilus]
5HHJ_A 4.05e-90 41 331 13 305
Reversetranscriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group [Roseburia intestinalis XB6B4],5HHJ_B Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group [Roseburia intestinalis XB6B4],5IRF_A Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group [Roseburia intestinalis XB6B4],5IRF_B Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group [Roseburia intestinalis XB6B4],5IRF_C Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group [Roseburia intestinalis XB6B4],5IRF_D Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group [Roseburia intestinalis XB6B4]
5HHL_A 9.68e-89 41 318 1 278
ChainA, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_B Chain B, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_C Chain C, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_D Chain D, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_E Chain E, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_F Chain F, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_G Chain G, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_H Chain H, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1]
5HHK_A 7.34e-86 42 331 14 305
Reversetranscriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group (Se-MET) [Roseburia intestinalis XB6B4],5HHK_B Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group (Se-MET) [Roseburia intestinalis XB6B4],5IRG_A Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P212121 space group [Roseburia intestinalis XB6B4],5IRG_B Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P212121 space group [Roseburia intestinalis XB6B4],5IRG_C Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P212121 space group [Roseburia intestinalis XB6B4],5IRG_D Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P212121 space group [Roseburia intestinalis XB6B4]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q47688 1.17e-46 44 324 23 344
Protein YkfC OS=Escherichia coli (strain K12) OX=83333 GN=ykfC PE=4 SV=3
P0A3U0 3.37e-39 33 315 16 359
Group II intron-encoded protein LtrA OS=Lactococcus lactis subsp. cremoris OX=1359 GN=ltrA PE=1 SV=1
P0A3U1 3.37e-39 33 315 16 359
Group II intron-encoded protein LtrA OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=ltrA PE=1 SV=1
P38478 1.49e-29 48 305 7 319
Uncharacterized mitochondrial protein ymf40 OS=Marchantia polymorpha OX=3197 GN=YMF40 PE=4 SV=1
B1N1A3 1.89e-29 59 254 41 234
Putative nicotine oxidoreductase OS=Pseudomonas putida OX=303 GN=nicA PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000064 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000042_00669.