Species | Phocaeicola sp900066445 | |||||||||||
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Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sp900066445 | |||||||||||
CAZyme ID | MGYG000000042_00669 | |||||||||||
CAZy Family | GH5 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 46454; End: 49738 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH5 | 508 | 789 | 5.7e-112 | 0.9884169884169884 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
TIGR04416 | group_II_RT_mat | 4.27e-167 | 53 | 398 | 1 | 354 | group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other] |
cd01651 | RT_G2_intron | 3.05e-87 | 106 | 317 | 1 | 226 | RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs). |
COG3344 | YkfC | 4.18e-48 | 30 | 317 | 32 | 325 | Retron-type reverse transcriptase [Mobilome: prophages, transposons]. |
pfam00078 | RVT_1 | 4.04e-37 | 110 | 317 | 1 | 189 | Reverse transcriptase (RNA-dependent DNA polymerase). A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. |
cd01650 | RT_nLTR_like | 4.57e-19 | 128 | 317 | 30 | 220 | RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
ALJ61520.1 | 0.0 | 439 | 1092 | 1 | 653 |
QUT92910.1 | 0.0 | 439 | 1092 | 1 | 651 |
QRM99007.1 | 0.0 | 440 | 1092 | 3 | 651 |
QUT32422.1 | 0.0 | 440 | 1092 | 3 | 651 |
QDO69414.1 | 0.0 | 447 | 1092 | 11 | 654 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
6AR1_A | 2.69e-103 | 46 | 425 | 3 | 381 | Structureof a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Nat)) [Geobacillus stearothermophilus],6AR1_D Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Nat)) [Geobacillus stearothermophilus],7K9Y_A Chain A, Trt [Geobacillus stearothermophilus],7K9Y_D Chain D, Trt [Geobacillus stearothermophilus] |
6AR3_A | 2.73e-102 | 46 | 425 | 3 | 381 | Structureof a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Se-Met)) [Geobacillus stearothermophilus],6AR3_D Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Se-Met)) [Geobacillus stearothermophilus] |
5HHJ_A | 4.05e-90 | 41 | 331 | 13 | 305 | Reversetranscriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group [Roseburia intestinalis XB6B4],5HHJ_B Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group [Roseburia intestinalis XB6B4],5IRF_A Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group [Roseburia intestinalis XB6B4],5IRF_B Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group [Roseburia intestinalis XB6B4],5IRF_C Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group [Roseburia intestinalis XB6B4],5IRF_D Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group [Roseburia intestinalis XB6B4] |
5HHL_A | 9.68e-89 | 41 | 318 | 1 | 278 | ChainA, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_B Chain B, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_C Chain C, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_D Chain D, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_E Chain E, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_F Chain F, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_G Chain G, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1],5HHL_H Chain H, Retron-type reverse transcriptase [[Eubacterium] rectale M104/1] |
5HHK_A | 7.34e-86 | 42 | 331 | 14 | 305 | Reversetranscriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group (Se-MET) [Roseburia intestinalis XB6B4],5HHK_B Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group (Se-MET) [Roseburia intestinalis XB6B4],5IRG_A Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P212121 space group [Roseburia intestinalis XB6B4],5IRG_B Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P212121 space group [Roseburia intestinalis XB6B4],5IRG_C Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P212121 space group [Roseburia intestinalis XB6B4],5IRG_D Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P212121 space group [Roseburia intestinalis XB6B4] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q47688 | 1.17e-46 | 44 | 324 | 23 | 344 | Protein YkfC OS=Escherichia coli (strain K12) OX=83333 GN=ykfC PE=4 SV=3 |
P0A3U0 | 3.37e-39 | 33 | 315 | 16 | 359 | Group II intron-encoded protein LtrA OS=Lactococcus lactis subsp. cremoris OX=1359 GN=ltrA PE=1 SV=1 |
P0A3U1 | 3.37e-39 | 33 | 315 | 16 | 359 | Group II intron-encoded protein LtrA OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=ltrA PE=1 SV=1 |
P38478 | 1.49e-29 | 48 | 305 | 7 | 319 | Uncharacterized mitochondrial protein ymf40 OS=Marchantia polymorpha OX=3197 GN=YMF40 PE=4 SV=1 |
B1N1A3 | 1.89e-29 | 59 | 254 | 41 | 234 | Putative nicotine oxidoreductase OS=Pseudomonas putida OX=303 GN=nicA PE=4 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000064 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
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