dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01835
Location and strand information: 6661 - 9354 (-)
Family: GH78|CBM67
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.5834
Protein molecular weight: 101209.94
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01836
Location and strand information: 9396 - 12728 (-)
Family: GH143|GH142
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.9809
Protein molecular weight: 127664.85
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01837
Location and strand information: 12756 - 13682 (-)
Family: GH43|GH43_18
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.0941
Protein molecular weight: 35605.61
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01838
Location and strand information: 13815 - 15917 (-)
Family: GH78
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.8669
Protein molecular weight: 80958.19
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01839
Location and strand information: 15940 - 17529 (-)
Family: GH28
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.7988
Protein molecular weight: 58899.32
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01840
Location and strand information: 17736 - 20366 (+)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 6.9241
Protein molecular weight: 98262.09
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01841
Location and strand information: 20680 - 25056 (+)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: Sensor histidine kinase RcsC

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01842
Location and strand information: 25119 - 26813 (+)
Family: PL1|PL1_2
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.3265
Protein molecular weight: 61969.24
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01843
Location and strand information: 26820 - 29960 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01844
Location and strand information: 30171 - 30734 (+)
Family: Sigma70_r2+Sigma70_r4_2
Protein type: STP
Protein description: ECF RNA polymerase sigma factor SigM

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01845
Location and strand information: 31769 - 33121 (-)
Family: GH105
Protein type: CAZyme
Protein description: Unsaturated rhamnogalacturonyl hydrolase YteR
Protein isoelectric point: 7.5531
Protein molecular weight: 50976.77
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01846
Location and strand information: 33128 - 33388 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01847
Location and strand information: 33571 - 36786 (+)
Family: GH2|CBM67
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 6.5144
Protein molecular weight: 122820.84
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01848
Location and strand information: 36810 - 39770 (+)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.4311
Protein molecular weight: 111156.08
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01849
Location and strand information: 39799 - 43107 (+)
Family: GH106
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.4916
Protein molecular weight: 123786.14
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01850
Location and strand information: 43167 - 44585 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01851
Location and strand information: 44622 - 46880 (+)
Family: GH139
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.975
Protein molecular weight: 87121.92
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01852
Location and strand information: 46972 - 51255 (+)
Family: GH137|CBM57|GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.4614
Protein molecular weight: 163849.98
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01853
Location and strand information: 51283 - 54009 (+)
Family: GH138
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.8847
Protein molecular weight: 103048.53
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01854
Location and strand information: 54185 - 55084 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01855
Location and strand information: 55116 - 58601 (+)
Family: 1.B.14.6.1
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01856
Location and strand information: 58625 - 60895 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01857
Location and strand information: 61051 - 61716 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01858
Location and strand information: 61885 - 63654 (+)
Family: PL1|PL1_2
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.7686
Protein molecular weight: 65580.68
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01859
Location and strand information: 63745 - 64410 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01860
Location and strand information: 64609 - 67095 (+)
Family: GH95|CBM2|CBM13
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.5529
Protein molecular weight: 93912.06
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01861
Location and strand information: 67140 - 68588 (+)
Family: GH140
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.6445
Protein molecular weight: 55921.2
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01862
Location and strand information: 68636 - 72673 (+)
Family: GH33|GH78|CBM67
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.9898
Protein molecular weight: 151843.71
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01863
Location and strand information: 72711 - 74807 (+)
Family: GH127
Protein type: CAZyme
Protein description: Non-reducing end beta-L-arabinofuranosidase
Protein isoelectric point: 6.773
Protein molecular weight: 79036.94
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01864
Location and strand information: 74854 - 76617 (+)
Family: GH141
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.9558
Protein molecular weight: 65947.89
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01865
Location and strand information: 76684 - 78021 (+)
Family: GH28
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.9846
Protein molecular weight: 50031.32
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001313_19|CGC1
Gene ID: MGYG000001313_01866
Location and strand information: 78032 - 79351 (+)
Family: CE19|CE0
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 9.4177
Protein molecular weight: 49864.14
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000001313_01835	GH78_e41\|3.2.1.40	alpha-rhamnoside
MGYG000001313_01836	GH143_e0\|GH142_e0
MGYG000001313_01837	GH43_e130\|3.2.1.55	xylan
MGYG000001313_01838	GH78_e26\|3.2.1.40	alpha-rhamnoside
MGYG000001313_01839	GH28_e22
MGYG000001313_01840	GH2_e53
MGYG000001313_01842	PL1_e27
MGYG000001313_01845
MGYG000001313_01847	GH2_e4\|CBM67_e8\|3.2.1.23	beta-galactan
MGYG000001313_01848	GH2_e77\|3.2.1.-	pectin
MGYG000001313_01849	GH106_e13\|3.2.1.40	pectin
MGYG000001313_01851	GH139_e0\|3.2.1.-	pectin
MGYG000001313_01852	GH2_e49\|GH137_e0\|CBM57_e1\|3.2.1.31\|3.2.1.185	pectin\|beta-glucuronan
MGYG000001313_01853	GH138_e0\|3.2.1.-
MGYG000001313_01858	PL1_e27
MGYG000001313_01860	GH95_e0\|CBM2_e92\|CBM13_e181\|3.2.1.-	xylan\|pectin
MGYG000001313_01861	GH140_e1\|3.2.1.-	pectin
MGYG000001313_01862	GH78_e32\|GH33_e8\|CBM67_e6\|3.2.1.40\|3.2.1.-	pectin\|alpha-rhamnoside
MGYG000001313_01863	GH127_e2\|3.2.1.-	carrageenan
MGYG000001313_01864	GH141_e0\|3.2.1.51	pectin
MGYG000001313_01865	GH28_e11
MGYG000001313_01866	CE0_e11

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000001313_01835	hypothetical protein	CAZyme	6661	9354	-	GH78\| CBM67
MGYG000001313_01836	hypothetical protein	CAZyme	9396	12728	-	GH143\| GH142
MGYG000001313_01837	hypothetical protein	CAZyme	12756	13682	-	GH43\| GH43_18
MGYG000001313_01838	hypothetical protein	CAZyme	13815	15917	-	GH78
MGYG000001313_01839	hypothetical protein	CAZyme	15940	17529	-	GH28
MGYG000001313_01840	Beta-galactosidase	CAZyme	17736	20366	+	GH2
MGYG000001313_01841	Sensor histidine kinase RcsC	TF	20680	25056	+	HTH_AraC+HTH_AraC
MGYG000001313_01842	hypothetical protein	CAZyme	25119	26813	+	PL1\| PL1_2
MGYG000001313_01843	hypothetical protein	null	26820	29960	+	DUF6298
MGYG000001313_01844	ECF RNA polymerase sigma factor SigM	STP	30171	30734	+	Sigma70_r2\| Sigma70_r4_2
MGYG000001313_01845	Unsaturated rhamnogalacturonyl hydrolase YteR	CAZyme	31769	33121	-	GH105
MGYG000001313_01846	hypothetical protein	null	33128	33388	-	No domain
MGYG000001313_01847	Beta-galactosidase	CAZyme	33571	36786	+	GH2\| CBM67
MGYG000001313_01848	Beta-galactosidase	CAZyme	36810	39770	+	GH2
MGYG000001313_01849	hypothetical protein	CAZyme	39799	43107	+	GH106
MGYG000001313_01850	hypothetical protein	null	43167	44585	+	SASA
MGYG000001313_01851	hypothetical protein	CAZyme	44622	46880	+	GH139
MGYG000001313_01852	Beta-galactosidase	CAZyme	46972	51255	+	GH137\| CBM57\| GH2
MGYG000001313_01853	hypothetical protein	CAZyme	51283	54009	+	GH138
MGYG000001313_01854	hypothetical protein	null	54185	55084	+	AP_endonuc_2
MGYG000001313_01855	hypothetical protein	TC	55116	58601	+	1.B.14.6.1
MGYG000001313_01856	hypothetical protein	null	58625	60895	+	SusD-like_3\| SusD_RagB
MGYG000001313_01857	hypothetical protein	null	61051	61716	+	DUF3826
MGYG000001313_01858	hypothetical protein	CAZyme	61885	63654	+	PL1\| PL1_2
MGYG000001313_01859	hypothetical protein	null	63745	64410	+	DUF3826
MGYG000001313_01860	hypothetical protein	CAZyme	64609	67095	+	GH95\| CBM2\| CBM13
MGYG000001313_01861	hypothetical protein	CAZyme	67140	68588	+	GH140
MGYG000001313_01862	hypothetical protein	CAZyme	68636	72673	+	GH33\| GH78\| CBM67
MGYG000001313_01863	Non-reducing end beta-L-arabinofuranosidase	CAZyme	72711	74807	+	GH127
MGYG000001313_01864	hypothetical protein	CAZyme	74854	76617	+	GH141
MGYG000001313_01865	hypothetical protein	CAZyme	76684	78021	+	GH28
MGYG000001313_01866	hypothetical protein	CAZyme	78032	79351	+	CE19\| CE0
Protein ID	Protein Name	Type	Start	End	Strand	Signature